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authorBart Ribbers <bribbers@disroot.org>2020-09-21 16:59:59 +0200
committerLeo <thinkabit.ukim@gmail.com>2020-09-21 17:20:01 +0000
commit0eb71337cccc82d742176b4d107efa26d95b1570 (patch)
tree0fae17b9df2243818cabe92ac2f16cbb80352643
parent536aad48066d3865cd22afe4fc58e3ca6fed009f (diff)
downloadaports-0eb71337cccc82d742176b4d107efa26d95b1570.tar.gz
aports-0eb71337cccc82d742176b4d107efa26d95b1570.tar.bz2
aports-0eb71337cccc82d742176b4d107efa26d95b1570.tar.xz
community/lapack: modernize and fix missing symbols
-rw-r--r--community/lapack/APKBUILD45
-rw-r--r--community/lapack/Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch140
2 files changed, 162 insertions, 23 deletions
diff --git a/community/lapack/APKBUILD b/community/lapack/APKBUILD
index 2c37f2de75..f08f4a01ec 100644
--- a/community/lapack/APKBUILD
+++ b/community/lapack/APKBUILD
@@ -2,45 +2,40 @@
# Maintainer: Francesco Colista <fcolista@alpinelinux.org>
pkgname=lapack
pkgver=3.9.0
-pkgrel=2
+pkgrel=3
pkgdesc="Linear Algebra PACKage"
url="http://www.netlib.org/lapack"
arch="all"
-license="custom"
-options="!check" #no longer test available
+license="BSD-3-Clause"
+options="!check" # Tests broken
makedepends="gfortran cmake"
-subpackages="
- $pkgname-dev:_dev
- blas
- blas-dev
+subpackages="$pkgname-dev:_dev blas blas-dev"
+source="https://github.com/Reference-LAPACK/lapack/archive/v$pkgver/lapack-v$pkgver.tar.gz
+ Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch
"
-source="lapack-$pkgver.tar.gz::https://github.com/Reference-LAPACK/lapack/archive/v$pkgver.tar.gz"
-
-prepare() {
- local i
- sed -e 's|/CMAKE/|/cmake/|' -i CBLAS/CMakeLists.txt
- mkdir sandbox
-}
build() {
- cd "$builddir"/sandbox
- cmake .. \
+ cmake -B build \
-DCMAKE_BUILD_TYPE=None \
- -DCMAKE_SKIP_RPATH=ON \
- -DBUILD_SHARED_LIBS=ON \
- -DBUILD_TESTING=OFF \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_INSTALL_LIBDIR=lib \
+ -DCMAKE_SKIP_RPATH=ON \
+ -DBUILD_SHARED_LIBS=ON \
+ -DBUILD_TESTING=ON \
-DCMAKE_Fortran_COMPILER=gfortran \
-DLAPACKE=ON \
-DCBLAS=ON \
-DBUILD_DEPRECATED=ON
- make
+ cmake --build build
+}
+
+check() {
+ cd build
+ CTEST_OUTPUT_ON_FAILURE=TRUE ctest
}
package() {
- cd "$builddir"/sandbox
- make DESTDIR="$pkgdir" install
+ DESTDIR="$pkgdir" cmake --build build --target install
}
_dev() {
@@ -50,6 +45,9 @@ _dev() {
"$pkgdir"/usr/include \
"$pkgdir"/usr/lib/pkgconfig \
"$pkgdir"/usr/lib/cmake
+
+ mv "$pkgdir"/usr/lib/libtmglib.so \
+ "$subpkgdir"/usr/lib
# Move development files meant for blas-dev
mv "$subpkgdir"/usr/lib/libblas.so \
@@ -76,4 +74,5 @@ blas() {
"$subpkgdir"/usr/lib
}
-sha512sums="424956ad941a60a4b71e0d451ad48db12a692f8a71a90f3ca7f71d6ecc1922f392746ea84df1c47a46577ed2db32e9e47ec44ad248207c5ac7da179becb712ef lapack-3.9.0.tar.gz"
+sha512sums="424956ad941a60a4b71e0d451ad48db12a692f8a71a90f3ca7f71d6ecc1922f392746ea84df1c47a46577ed2db32e9e47ec44ad248207c5ac7da179becb712ef lapack-v3.9.0.tar.gz
+df52008c824a63828c396152f5505cb228f1b4114df0208322efae620fc4f5c918e8975e84d29b9edb54d9f019c614a9a6a802cdefaadbe47f3cfac0a120c161 Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch"
diff --git a/community/lapack/Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch b/community/lapack/Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch
new file mode 100644
index 0000000000..87f46cfacd
--- /dev/null
+++ b/community/lapack/Restore-missing-prototypes-for-deprecated-LAPACK-fun.patch
@@ -0,0 +1,140 @@
+From 87536aa3c8bb0af00f66088fb6ac05d87509e011 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?S=C3=A9bastien=20Villemot?= <sebastien@debian.org>
+Date: Sat, 23 Nov 2019 12:22:20 +0100
+Subject: [PATCH] Restore missing prototypes for deprecated LAPACK functions
+
+Some LAPACK functions prototypes were inadvertedly dropped in 3.9.0. As a
+consequence, LAPACKE has several unresolved symbols.
+
+Closes #365
+---
+ LAPACKE/include/lapack.h | 100 +++++++++++++++++++++++++++++++++++++++
+ 1 file changed, 100 insertions(+)
+
+diff --git a/LAPACKE/include/lapack.h b/LAPACKE/include/lapack.h
+index 3f42532..5c131d8 100644
+--- a/LAPACKE/include/lapack.h
++++ b/LAPACKE/include/lapack.h
+@@ -1842,6 +1842,28 @@ void LAPACK_zgeqlf(
+ lapack_complex_double* work, lapack_int const* lwork,
+ lapack_int* info );
+
++#define LAPACK_sgeqpf LAPACK_GLOBAL(sgeqpf,SGEQPF)
++void LAPACK_sgeqpf( lapack_int* m, lapack_int* n, float* a, lapack_int* lda,
++ lapack_int* jpvt, float* tau, float* work,
++ lapack_int *info );
++
++#define LAPACK_dgeqpf LAPACK_GLOBAL(dgeqpf,DGEQPF)
++void LAPACK_dgeqpf( lapack_int* m, lapack_int* n, double* a, lapack_int* lda,
++ lapack_int* jpvt, double* tau, double* work,
++ lapack_int *info );
++
++#define LAPACK_cgeqpf LAPACK_GLOBAL(cgeqpf,CGEQPF)
++void LAPACK_cgeqpf( lapack_int* m, lapack_int* n, lapack_complex_float* a,
++ lapack_int* lda, lapack_int* jpvt,
++ lapack_complex_float* tau, lapack_complex_float* work,
++ float* rwork, lapack_int *info );
++
++#define LAPACK_zgeqpf LAPACK_GLOBAL(zgeqpf,ZGEQPF)
++void LAPACK_zgeqpf( lapack_int* m, lapack_int* n, lapack_complex_double* a,
++ lapack_int* lda, lapack_int* jpvt,
++ lapack_complex_double* tau, lapack_complex_double* work,
++ double* rwork, lapack_int *info );
++
+ #define LAPACK_cgeqp3 LAPACK_GLOBAL(cgeqp3,CGEQP3)
+ void LAPACK_cgeqp3(
+ lapack_int const* m, lapack_int const* n,
+@@ -3617,6 +3639,47 @@ void LAPACK_zggrqf(
+ lapack_complex_double* work, lapack_int const* lwork,
+ lapack_int* info );
+
++#define LAPACK_sggsvd LAPACK_GLOBAL(sggsvd,SGGSVD)
++lapack_int LAPACKE_sggsvd( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int n, lapack_int p,
++ lapack_int* k, lapack_int* l, float* a,
++ lapack_int lda, float* b, lapack_int ldb,
++ float* alpha, float* beta, float* u, lapack_int ldu,
++ float* v, lapack_int ldv, float* q, lapack_int ldq,
++ lapack_int* iwork );
++
++#define LAPACK_dggsvd LAPACK_GLOBAL(dggsvd,DGGSVD)
++lapack_int LAPACKE_dggsvd( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int n, lapack_int p,
++ lapack_int* k, lapack_int* l, double* a,
++ lapack_int lda, double* b, lapack_int ldb,
++ double* alpha, double* beta, double* u,
++ lapack_int ldu, double* v, lapack_int ldv, double* q,
++ lapack_int ldq, lapack_int* iwork );
++
++#define LAPACK_cggsvd LAPACK_GLOBAL(cggsvd,CGGSVD)
++lapack_int LAPACKE_cggsvd( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int n, lapack_int p,
++ lapack_int* k, lapack_int* l,
++ lapack_complex_float* a, lapack_int lda,
++ lapack_complex_float* b, lapack_int ldb,
++ float* alpha, float* beta, lapack_complex_float* u,
++ lapack_int ldu, lapack_complex_float* v,
++ lapack_int ldv, lapack_complex_float* q,
++ lapack_int ldq, lapack_int* iwork );
++
++#define LAPACK_zggsvd LAPACK_GLOBAL(zggsvd,ZGGSVD)
++lapack_int LAPACKE_zggsvd( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int n, lapack_int p,
++ lapack_int* k, lapack_int* l,
++ lapack_complex_double* a, lapack_int lda,
++ lapack_complex_double* b, lapack_int ldb,
++ double* alpha, double* beta,
++ lapack_complex_double* u, lapack_int ldu,
++ lapack_complex_double* v, lapack_int ldv,
++ lapack_complex_double* q, lapack_int ldq,
++ lapack_int* iwork );
++
+ #define LAPACK_cggsvd3 LAPACK_GLOBAL(cggsvd3,CGGSVD3)
+ void LAPACK_cggsvd3(
+ char const* jobu, char const* jobv, char const* jobq,
+@@ -3679,6 +3742,43 @@ void LAPACK_zggsvd3(
+ lapack_int* iwork,
+ lapack_int* info );
+
++#define LAPACK_sggsvp LAPACK_GLOBAL(sggsvp,SGGSVP)
++lapack_int LAPACKE_sggsvp( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int p, lapack_int n, float* a,
++ lapack_int lda, float* b, lapack_int ldb, float tola,
++ float tolb, lapack_int* k, lapack_int* l, float* u,
++ lapack_int ldu, float* v, lapack_int ldv, float* q,
++ lapack_int ldq );
++
++#define LAPACK_dggsvp LAPACK_GLOBAL(dggsvp,DGGSVP)
++lapack_int LAPACKE_dggsvp( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int p, lapack_int n, double* a,
++ lapack_int lda, double* b, lapack_int ldb,
++ double tola, double tolb, lapack_int* k,
++ lapack_int* l, double* u, lapack_int ldu, double* v,
++ lapack_int ldv, double* q, lapack_int ldq );
++
++#define LAPACK_cggsvp LAPACK_GLOBAL(cggsvp,CGGSVP)
++lapack_int LAPACKE_cggsvp( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int p, lapack_int n,
++ lapack_complex_float* a, lapack_int lda,
++ lapack_complex_float* b, lapack_int ldb, float tola,
++ float tolb, lapack_int* k, lapack_int* l,
++ lapack_complex_float* u, lapack_int ldu,
++ lapack_complex_float* v, lapack_int ldv,
++ lapack_complex_float* q, lapack_int ldq );
++
++#define LAPACK_zggsvp LAPACK_GLOBAL(zggsvp,ZGGSVP)
++lapack_int LAPACKE_zggsvp( int matrix_layout, char jobu, char jobv, char jobq,
++ lapack_int m, lapack_int p, lapack_int n,
++ lapack_complex_double* a, lapack_int lda,
++ lapack_complex_double* b, lapack_int ldb,
++ double tola, double tolb, lapack_int* k,
++ lapack_int* l, lapack_complex_double* u,
++ lapack_int ldu, lapack_complex_double* v,
++ lapack_int ldv, lapack_complex_double* q,
++ lapack_int ldq );
++
+ #define LAPACK_cggsvp3 LAPACK_GLOBAL(cggsvp3,CGGSVP3)
+ void LAPACK_cggsvp3(
+ char const* jobu, char const* jobv, char const* jobq,
+
+