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# Contributor: Nirosan <pnirosan@gmail.com>
# Contributor: Jakub Jirutka <jakub@jirutka.cz>
# Maintainer: Jakub Jirutka <jakub@jirutka.cz>
pkgname=R
pkgver=4.1.0
pkgrel=1
pkgdesc="Language and environment for statistical computing"
url="https://www.r-project.org/"
# mips64 and riscv64 blocked by java-jre-headless
arch="all !mips64 !riscv64"
license="(GPL-2.0-only OR GPL-3.0-only) AND LGPL-2.1-or-later"
depends="$pkgname-mathlib"
depends_dev="gcc gfortran icu-dev libjpeg-turbo libpng-dev make openblas-dev>=0.3.0
pcre2-dev readline-dev xz-dev zlib-dev bzip2-dev curl-dev>=7.28
"
makedepends="$depends_dev cairo-dev libxmu-dev java-jre-headless pango-dev
perl tiff-dev tk-dev
"
install="$pkgname.post-install"
subpackages="$pkgname-mathlib $pkgname-dev:_dev $pkgname-doc"
source="https://cran.r-project.org/src/base/R-${pkgver%%.*}/R-$pkgver.tar.gz"
_rhome="usr/lib/R"
ldpath="/$_rhome/lib"
build() {
# Performance is more important than size for R. Moreover, -O2 has
# only minimal impact on the R package size (less than 1 %).
export CFLAGS="${CFLAGS/-Os/-O2}"
export CXXFLAGS="${CXXFLAGS/-Os/-O2}"
# CXXFLAGS is propagated to /etc/R/Makeconf that is read when building
# additional R modules. -D__MUSL__ is needed for some modules like Rcpp.
# htps://github.com/RcppCore/Rcpp/issues/448
export CXXFLAGS="$CXXFLAGS -D__MUSL__"
./configure \
--prefix=/usr \
--sysconfdir=/etc/R \
--localstatedir=/var \
--mandir=/usr/share/man \
--libdir=/usr/lib \
rdocdir=/usr/share/doc/R \
rincludedir=/usr/include/R \
rsharedir=/usr/share/R \
--disable-nls \
--enable-R-shlib \
--enable-java \
--without-recommended-packages \
--with-blas=openblas \
--with-cairo \
--with-ICU \
--with-jpeglib \
--with-lapack \
--with-libpng \
--with-libtiff \
--with-tcltk \
--with-x
make -j1
make -j1 -C src/nmath/standalone
}
# TODO: Run provided test suite.
check() {
./bin/R --version
./bin/R --slave --vanilla -e 'print("Hello, world!")'
}
package() {
local destdir="$pkgdir/$_rhome"
make DESTDIR="$pkgdir" install
# Install libRmath.so.
cd src/nmath/standalone
make DESTDIR="$pkgdir" install
cd -
# Fixup R wrapper script (taken from Arch).
rm "$destdir"/bin/R
ln -sf /usr/bin/R "$destdir"/bin/R
# Remove some useless files (COPYING is duplicated, it will be
# in -doc, don't worry).
rm "$destdir"/COPYING "$destdir"/SVN-REVISION
mkdir -p "$pkgdir"/etc/R
# R apparently ignores --sysconfdir, so we must manually move configs
# to /etc/R and make symlinks.
cd "$destdir"/etc
local f; for f in *; do
mv "$f" "$pkgdir"/etc/R/ && ln -sf /etc/R/$f $f
done
cd -
# Fix #8918
# R expects iconv -l to return whitespace-separated list of
# locales, our returns ', ' separated so it adds a , for every
# locale
sed -i 's/,//g' "$pkgdir"/usr/lib/R/library/utils/iconvlist
}
mathlib() {
pkgdesc="Standalone math library from the R project"
mkdir -p "$subpkgdir"/usr/lib
mv "$pkgdir"/usr/lib/libRmath.so* "$subpkgdir"/usr/lib
}
_dev() {
depends="R=$pkgver-r$pkgrel"
default_dev
}
sha512sums="
41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729 R-4.1.0.tar.gz
"
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