diff options
Diffstat (limited to 'community/R/APKBUILD')
| -rw-r--r-- | community/R/APKBUILD | 87 |
1 files changed, 67 insertions, 20 deletions
diff --git a/community/R/APKBUILD b/community/R/APKBUILD index 2a65b534268..1539d0a2a34 100644 --- a/community/R/APKBUILD +++ b/community/R/APKBUILD @@ -2,18 +2,40 @@ # Contributor: Jakub Jirutka <jakub@jirutka.cz> # Maintainer: Jakub Jirutka <jakub@jirutka.cz> pkgname=R -pkgver=4.0.5 +pkgver=4.4.0 pkgrel=0 pkgdesc="Language and environment for statistical computing" url="https://www.r-project.org/" -arch="all !mips !mips64" -license="(GPL-2.0-only OR GPL-3.0-only) AND LGPL-2.1-or-later" +# riscv64: blocked by java-jre-headless +arch="all !riscv64" +license="( GPL-2.0-only OR GPL-3.0-only ) AND LGPL-2.1-or-later" depends="$pkgname-mathlib" -depends_dev="gcc gfortran icu-dev libjpeg-turbo libpng-dev make openblas-dev>=0.3.0 - pcre2-dev readline-dev xz-dev zlib-dev bzip2-dev curl-dev>=7.28 +depends_dev=" + bzip2-dev + curl-dev>=7.28 + gcc + gfortran + icu-dev + libdeflate-dev + libjpeg-turbo + libpng-dev + make + musl-dev + openblas-dev>=0.3.0 + pcre2-dev + readline-dev + xz-dev + zlib-dev " -makedepends="$depends_dev cairo-dev libxmu-dev openjdk8-jre-base pango-dev - perl tiff-dev tk-dev +makedepends=" + $depends_dev + cairo-dev + java-jdk + libxmu-dev + pango-dev + perl + tiff-dev + tk-dev " install="$pkgname.post-install" subpackages="$pkgname-mathlib $pkgname-dev:_dev $pkgname-doc" @@ -23,10 +45,19 @@ _rhome="usr/lib/R" ldpath="/$_rhome/lib" build() { + # Performance is more important than size for R. Moreover, -O2 has + # only minimal impact on the R package size (less than 1 %). + export CFLAGS="${CFLAGS/-Os/-O2}" + export CPPFLAGS="${CPPFLAGS/-Os/-O2}" + export CXXFLAGS="${CXXFLAGS/-Os/-O2}" + # CXXFLAGS is propagated to /etc/R/Makeconf that is read when building # additional R modules. -D__MUSL__ is needed for some modules like Rcpp. # htps://github.com/RcppCore/Rcpp/issues/448 - CXXFLAGS="$CXXFLAGS -D__MUSL__" ./configure \ + export CXXFLAGS="$CXXFLAGS -D__MUSL__" + + r_cv_have_curl728=y \ + ./configure \ --prefix=/usr \ --sysconfdir=/etc/R \ --localstatedir=/var \ @@ -38,6 +69,7 @@ build() { --disable-nls \ --enable-R-shlib \ --enable-java \ + --enable-lto \ --without-recommended-packages \ --with-blas=openblas \ --with-cairo \ @@ -49,14 +81,33 @@ build() { --with-tcltk \ --with-x - make -j1 - make -j1 -C src/nmath/standalone + make + make -C src/nmath/standalone } -# TODO: Run provided test suite. check() { - ./bin/R --version - ./bin/R --slave --vanilla -e 'print("Hello, world!")' + # Try running R (and also aid debugging). + ./bin/R --vanilla -s -e 'sessionInfo(); R_compiled_by(); str(.Machine)' + + case "$CARCH" in + # A (non-portable) numerical regression test currently (R 4.4.0) + # fails on the aarch64 and s390x runners. + # Run at least two basic test suites: + aarch64 | s390x) + make -C tests test-Examples && make -C tests test-Specific || { + tail -v -n 42 tests/*.fail; exit 1 + } + ;; + *) + make check || { + tail -v -n 42 tests/*.fail; exit 1 + } + ;; + esac + + # NOTE: EST5EDT-related differences reported for datetime.Rout are known + # (see <https://mm.icann.org/pipermail/tz/2024-March/058740.html> + # or also <https://bugs.r-project.org/show_bug.cgi?id=16843#c12>) } package() { @@ -86,12 +137,6 @@ package() { mv "$f" "$pkgdir"/etc/R/ && ln -sf /etc/R/$f $f done cd - - - # Fix #8918 - # R expects iconv -l to return whitespace-separated list of - # locales, our returns ', ' separated so it adds a , for every - # locale - sed -i 's/,//g' "$pkgdir"/usr/lib/R/library/utils/iconvlist } mathlib() { @@ -106,4 +151,6 @@ _dev() { default_dev } -sha512sums="6ff5b0f9cb6b17f66cde1f5585d1b33659dbae8919d34c2e593f68a0bff4d0425aa9704d99284d103702a9cd42f613311f3a87af6b939b1af65dcec80bf2ca8c R-4.0.5.tar.gz" +sha512sums=" +8f44eac49c58db7f161732135be4d1757f65b18545f3f15c463d499794735d02f4a4cb9bacff90d16e80b624ead8aa0af16899cf7654b6cb91a46868e405bd17 R-4.4.0.tar.gz +" |